2013 Publications

38. Webber, N.; He, Y.; Reilly, J. P., 157 nm photodissociation of dipeptide ions containing N-terminal arginine. Journal of the American Society for Mass Spectrometry 2013, in press.
    
    
37. He, Y.; Webber, N.; Reilly, J. P., 157 nm photodissociation of a complete set of dipeptides containing C-terminal arginine. Journal of the American Society for Mass Spectrometry 2013, 24(5), 675-83.
    
    

2012 Publications

36. Lee, S.; Li, Z.; Valentine, S.; Zucker, S.; Webber, N.; Reilly, J. P.; Clemmer, D. E., Extracted fragment ion mobility distributions: A new method for complex mixture analysis. International Journal of Mass Spectrometry 2012, 309, 154-160.
    
    
35. Lee, S.; Julian, R. R.; Valentine, S. J.; Reilly, J. P.; Clemmer, D. E., Biomolecular condensation via ultraviolet excitation in vacuo. International Journal of Mass Spectrometry 2012, 316-318, 6-11.
    
    
34. Zhu, F.; Lee, S.; Valentine, S. J.; Reilly, J. P.; Clemmer, D. E., Mannose7 glycan isomer characterization by IMS-MS/MS analysis. Journal of the American Society for Mass Spectrometry 2012, 23(12), 2158-2166.
    
    
33. Jaffee, E.; Lauber, M. A.; Reilly, J. P., In vitro and in vivo chemical labeling of ribosomal proteins: A quantitative comparison. Analytical Chemistry 2012, 84(21), 9355-9361.
    
    
32. Running, W. E.; Ni, P.; Kao, C.; Reilly, J. P., Chemical reactivity of brome mosaic virus capsid protein. Journal of Molecular Biology 2012, 423(1), 79-95.
    
    
31. Lee, S.; Valentine, S. J.; Reilly, J. P.; Clemmer, D. E., Analyzing a mixture of disaccharides by IMS-VUVPD-MS. International Journal of Mass Spectrometry 2012, 309, 161-167.
    
    
30. Lauber, M. A.; Rappsilber, J.; Reilly, J. P., Dynamics of ribosomal protein S1 on a bacterial ribosome with cross-linking and mass spectrometry. Molecular and Cellular Proteomics 2012, 11(12), 1965-1976.
    
    
29. He, Y.; Lauber, M. A.; Reilly, J. P., Unique fragmentation of singly charged DEST cross-linked peptides. Journal of the American Society for Mass Spectrometry 2012, 23(6), 1046-1052.
    
    
28. He, Y.; Parthasarathi, R.; Raghavachari, K.; Reilly, J. P., Photodissociation of charge tagged peptides. Journal of the American Society for Mass Spectrometry 2012, 23(7), 1182-1190.
    
    

2011 Publications

27. Chang, F-M. J.; Lauber, M. A.; Running, W. E.; Reilly, J. P.; Giedroc, D. P., Ratiometric pulse-chase amidination mass spectrometry as a probe of biomolecular complex formation. Analytical Chemistry 2011, 83(23), 3669-3687.
    
    
26. Lee, S.; Valentine, S. J.; Reilly, J. P.; Clemmer, D. E., Controlled formation of peptide bonds in the gas-phase. Journal of the American Chemical Society 2011, 133(40), 15834–15837.
    
    
25. Liu, X.; Bohrer, B. C.; Arnold, R. J.; Radivojac, R.; Tang, H.; Reilly, J. P., Comparison of de novo sequencing and Mascot database searching for peptide identification using photodissociation data. Rapid Communications in Mass Spectrometry 2011, submitted.
    
    
24. He, Y.; Poehlman, J. F.; Alexander, A. W.; Boraas, K.; Reilly, J. P., One hundred anode microchannel plate ion detector. Review Scientific Instruments 2011, 82(8), 085106.
    
    
23. Lauber, M. A.; Reilly, J. P., Structural Analysis of a Prokaryotic Ribosome Using a Novel Amidinating Cross-Linker and Mass Spectrometry. Journal of Proteome Research 2011, 10(8), 3604-3616.
    
    
22. Liu, X.; Li, Y. F.; Bohrer, B. C.; Arnold, R. J.; Radivojac, P.; Tang, H.; Reilly, J. P., Investigation of VUV photodissociation propensities using peptide libraries. International Journal of Mass Spectrometry 2011, 308(2-3), 142-154.
    
    

2010 Publications

21. Lauber, M. A.; Reilly, J. P., Novel amidinating cross-linker for facilitating analyses of protein structures and interactions. Analytical Chemistry 2010, 82(18), 7736-7743.
    
    
20. Running, W. E.; Reilly, J. P., Variation of the chemical reactivity of Thermus thermophilus HB8 ribosomal proteins as a function of pH. Proteomics 2010, 10(20), 3669-3687.
    
    
19. Zhang, L.; Reilly, J. P., Peptide de novo sequencing using 157 nm photodissociation in a tandem time-of-flight mass spectrometer. Analytical Chemistry 2010, 82(3), 898-908.
    
    
18. Ravipaty, S.; Reilly, J. P., Comprehensive characterization of methicillin-resistant Staphylococcus aureus subsp. aureus COL secretome by two-dimensional liquid chromatography and mass spectrometry. Molecular and Cellular Proteomics 2010, 9(9), 1898-1919.
    
    
17. Parthasarathi, R.; He, Y.; Reilly, J. P.; Raghavachari, K., New insights into the vacuum UV photodissociation of peptides. Journal of the American Chemical Society 2010, 132(5), 1606-1610.
    
    
16. Kim, T.-Y.; Valentine, S. J.; Clemmer, D. E.; Reilly, J. P., Gas-phase conformation-specific photofragmentation of proline-containing peptide ions. Journal of the American Society for Mass Spectrometry 2010, 21(8), 1455-1465.
    
    
15. Bohrer, B. C.; Li, Y. F.; Reilly, J. P.; Clemmer, D. E.; Di Marchi, R. D.; Radivojac, P.; Tang, H.; Arnold, R. J., Combinatorial libraries of synthetic peptides as a model for shotgun proteomics. Analytical Chemistry 2010, 82(15), 6559-6568.
    
    
14. Zhang, L.; Reilly, J. P., De novo sequencing of tryptic peptides derived from Deinococcus radiodurans ribosomal proteins using 157 nm photodissociation MALDI TOF/TOF mass spectrometry. Journal of proteome research 2010, 9(6), 3025-34.
    
    

2009 Publications

13. Reilly J. P., Ultraviolet photofragmentation of biomolecular ions. Mass spectrometry reviews 2009, 28(3), 425-47.
    
    
12. Lauber, M. A.; Running, W. E.; Reilly, J. P., B. subtilis ribosomal proteins: structural homology and post-translational modifications. J. Proteome Res. 2009, 8(9), 4193-4206.
    
    
11. Liu, X.; Reilly, J. P., Correlating the chemical modification of escherichia coli ribosomal proteins with crystal structure data. J. Proteome Res. 2009, 8(10), 4466-4478.
    
    
10. Kim, T.-Y.; Schwartz, J. C.; Reilly, J. P., Development of a linear ion trap/orthogonal-time-of-flight mass spectrometer for time-dependent observation of product ions by ultraviolet photodissociation of peptide ions. Analytical Chemistry 2009, 81(21), 8809-8817.
    
    
9. Zhang, L.; Reilly, J. P., Extracting both peptide sequence and glycan structural information by 157 nm photodissociation of N-linked glycopeptides. J. Proteome Res. 2009, 8(2), 734-742.
   
   
8. Zhang, L.; Reilly, J. P., Peptide photodissociation with 157 nm light in a commercial tandem time-of-flight mass spectrometer. Analytical Chemistry 2009, 81(18), 7829-7838.
   
   
7. Zhang, L.; Reilly, J. P., Radical-driven dissociation of odd-electron peptide radical ions produced in 157 nm photodissociation. Journal of the American Society for Mass Spectrometry 2009, 20(7), 1378-1390.
   
   
6. Running, W. E.; Reilly, J. P., Ribosomal proteins of Deinococcus radiodurans: their solvent accessibility and reactivity. J. Proteome Res. 2009, 8(3), 1228-1246.
   
   
5. Kim, T.-Y.; Reilly, J. P., Time-resolved observation of product ions generated by 157 nm photodissociation of singly protonated phosphopeptides. Journal of the American Society for Mass Spectrometry 2009, 20(12), 2334-2341.
   
   

2008 Publications

4. He, Y.; J. P. Reilly, Does a charge tag really provide a fixed charge? Angewandte Chemie. 2008, 120, 2497-99.
   
   
3. Devakumar, A.; O'Dell, D. K.; Walker, J. M.; Reilly, J. P., Structural analysis of leukotriene C4 isomers using collisional activation and VUV photodissociation. J. Am. Soc. Mass Spectrom. 2008, 19, 14-26.
   
   
2. R. J. Arnold, William Running and J.P. Reilly, Analysis of Methylation, Acetylation and other Modifications in Bacterial Ribosomal Proteins, Chap. 11, pgs, 151-161, Post-Translational Modifications of Proteins, Tools for Functional Proteomics, 2nd Edition, Kannicht, Christoph (Ed.), Methods in Molecular Biology, Vol 446.
   
   
1. Zhang, L.; Reilly, J. P., Use of 157 nm photodissociation to probe structures of y- and b-type ions produced in collision induced dissociation of peptide ions. J. Am. Soc. Mass Spectrom., 19(5) 695-702.